Author
The University of Texas at AustinORCID 0009-0007-7526-0439Unclaimed ORCID profile · follow to get notified of new preprints
5 papers
Recent·Most cited
Kimonas Provatas, Aris Karatzikos, Charalampos Koilakos…·Ilias Georgakopoulos‐Soares
This paper introduces speculative decoding to accelerate genomic and proteomic sequence generation using foundation models without compromising prediction quality.
Kimonas Provatas, Guliang Wang, Nikol Chantzi…·Karen M. Vásquez
HSeeker identifies and scores H-DNA-forming sequences using a three-part algorithm, providing genomic coordinates and stability scores for further analysis.
Spyros Zaranikas, Georgios Megalovasilis, Kimonas Provatas…·Ilias Georgakopoulos Soares
ZSeekerDB catalogs Z-nucleic acid sequences across organismal genomes, enabling cross-species analysis of their distribution and evolutionary significance.
Guliang Wang, Ioannis Mouratidis, Kimonas Provatas…·Karen M. Vásquez
ZSeeker detects potential Z-DNA-forming sequences in genomes with improved accuracy and accessibility through a Python package and web interface.
Kimonas Provatas, Nikol Chantzi, Nafsika Amptazi…·Ilias Georgakopoulos‐Soares
invertiaDB is a database of inverted repeats across 118,070 organisms, providing a centralized resource for searching, visualizing, and downloading inverted repeat data.