Author

Charles G Danko

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Andre L Martins· 2 shared Adam SiepeliD· 1 shared Albin SandeliniD· 1 shared Colin T Waters· 1 shared Hyung Won Lee· 1 shared John T. LisiD· 1 shared Leighton J Core· 1 shared Robin AnderssoniD· 1 shared

Activity by Year

2014-2016 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Andre L Martins

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3 papers

Recent·Most cited

RTFBSDB: an integrated framework for transcription factor binding site analysis

Zhong Wang, Andre L Martins, Charles G Danko

The paper introduces rtfbsdb, a framework that integrates TF binding motifs and tools for genome scanning, with options to use RNA-seq or PRO-seq data for motif analysis.

Bioinformatics · Jun 10, 2016Peer-reviewedBioinformatics

A Unified Architecture of Transcriptional Regulatory Elements

Robin Andersson, Albin Sandelin, Charles G Danko

This paper proposes a unified model of promoters and enhancers as a single class of transcriptional regulatory elements with shared architectural features.

bioRxiv · May 26, 2015Genomics

Accurate Identification of Active Transcriptional Regulatory Elements from Global Run-On and Sequencing Data

Charles G Danko, Stephanie L Hyland, Leighton J Core, Andre L Martins, Colin T Waters, Hyung Won Lee, Vivian G Cheung, W. Lee Kraus, John T. Lis, Adam Siepel

The paper introduces dREG, a machine-learning method to identify active transcriptional regulatory elements from GRO-seq data, showing strong enrichment for functional marks.

bioRxiv · Nov 12, 2014Genomics