Systematic analysis of cell phenotypes and cellular social networks in tissues using the histology topography cytometry analysis toolbox (histoCAT)
Denis Schapiro, Hartland Warren Jackson, Swetha Raghuraman, Jana Raja Fischer, Vito RT Zanotelli, Daniel Schulz, Charlotte Giesen, Raúl Catena, Zsuzsanna Varga, Bernd Bodenmiller
The paper introduces histoCAT, a tool for analyzing single-cell spatial omics data to explore cell phenotypes and interactions in tissues, demonstrating its application on human breast cancer mass cytometry images.
Nature Methods · Aug 7, 2017Peer-reviewedSystems Biology