Author

Charlotte Soneson

Primary ORCID profile (0000-0003-3833-2169 · 35 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Charlotte SonesoniD35 papers · SIB Swiss Institute of Bioinformatics

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:statistical model· 1

Frequent Co-Authors

Mark D Robinson· 2 shared Charity W Law· 1 shared Katarina L Matthes· 1 shared Malgorzata Nowicka· 1 shared

Activity by Year

2015-2015 · peak 2/yr

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4 top collaborators · 6 mutual co-author links

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2 shared papersBioinformatics

Mark D Robinson

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2 papers

Recent·Most cited

iCOBRA: open, reproducible, standardized and live method benchmarking

Charlotte Soneson, Mark D Robinson

iCOBRA provides a web-based tool and R package for benchmarking and comparing method performance with ground truth, enabling reproducible and standardized evaluations.

bioRxiv · Dec 1, 2015Bioinformatics

Differential transcript usage from RNA-seq data: isoform pre-filtering improves performance of count-based methods

Charlotte Soneson, Katarina L Matthes, Malgorzata Nowicka, Charity W Law, Mark D Robinson

The paper evaluates methods for detecting differential transcript usage from RNA-seq data, showing that isoform-level pre-filtering improves false discovery rate control.

bioRxiv · Oct 13, 2015Bioinformatics