3D reconstruction of spatial transcriptomics with spatial pattern enhanced graph convolutional neural network
Chen Tang, Yuansheng Zhou, Xue Xiao, Lei Dong, Lei Yu, Q. Y. Li, Guanghua Xiao, Lori Xu
This paper introduces Spa3D, a method that reconstructs 3D spatial structures from 2D spatial transcriptomics data, improving spatial domain identification, cell-cell communication analysis, and developmental trajectory modeling.
Briefings in Bioinformatics · Jan 1, 2026Peer-reviewedBioinformatics