Author

Chia-Yi Cheng

National Taiwan University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Agnes Chan· 1 shared Christopher D. Town· 1 shared Hsiu-Ru Yang· 1 shared Kuan‐Hung LiniD· 1 shared Kulaporn BoonyavesiD· 1 shared Lavakau Thalimaraw· 1 shared Ming-Jen Yen· 1 shared Seth Schobel· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperPlant Biology

Agnes Chan

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2 papers

Recent·Most cited

Evolutionarily Conserved Heat-Induced Chromatin Dynamics Drive Heat Stress Responses in Plants

Ming-Jen Yen, Kuan‐Hung Lin, Lavakau Thalimaraw, Hsiu-Ru Yang, Kulaporn Boonyaves, Chia-Yi Cheng, Ting‐Ying Wu

The paper identifies HSFA1 as a conserved regulator of chromatin dynamics in heat stress responses across plants, mice, and humans, and develops a cross-species machine learning framework to predict chromatin accessibility and gene expression.

bioRxiv · Mar 5, 2025 · PreprintPlant Biology

Araport11: a complete reannotation of the Arabidopsis thaliana reference genome

CHIA-YI Cheng, Vivek Krishnakumar, Agnes Chan, Seth Schobel, Christopher D. Town

The paper reannotates the Arabidopsis thaliana genome using RNA-seq data, identifying new genes and non-coding RNA, and revealing more complex gene structures.

The Plant Journal · Feb 10, 2017Peer-reviewedPlant Biology