Arabidopsis

The paper identifies protein-protein interactions in the core MCC of Arabidopsis thaliana using structural analysis, revealing new binding sites and interaction hierarchies.

The paper identifies gene regulatory networks governing seed size in Brassica napus through transcriptomic analysis of developmental stages and seed organs.

TideCluster is a pipeline for clustering and classifying tandem repeats across genomes, demonstrated on Arabidopsis and Solanum species.

The paper shows that heat stress reverses the growth-promoting thermomorphogenesis pathway in Arabidopsis by suppressing auxin and PIF4 in cotyledons, revealing an active molecular mechanism.

This study identifies surface proteins in Asgard archaea using visual surfaceomics, revealing a peptidophilic cell surface involved in peptide capture and symbiotic interactions.

This paper simulates Arabidopsis root tip development from a genome, showing emergent cell identities and zones without pre-defined structures, but with limitations in niche maintenance and regeneration.

This study investigates the role of NATA1 and NATA2 in regulating polyamine acetylation in Arabidopsis, showing that NATA2 is heat-inducible and beneficial under heat stress, while its double knockout is lethal.

Earl Grey ParTEA annotates transposable elements across multiple genomes, revealing shared and private TE families and improving annotation consistency.

This study identifies the bHLH121-CAT2 module as a novel regulatory pathway that maintains root tip redox homeostasis and enhances salt tolerance in Arabidopsis independently of the SOS pathway.

The paper identifies a uORF, PHYRE, essential for phytochrome B translation and photomorphogenesis in Arabidopsis, showing its role in translational regulation.

This study investigates how PWO1 and PWO2 proteins interact with circadian and epigenetic signaling to regulate flowering time in Arabidopsis.

This study investigates the role of anionic lipids in etioplast-to-chloroplast differentiation, finding that phosphatidylglycerol is crucial for membrane processes while sulfoquinovosyldiacylglycerol supports chloroplast development under PG limitation.

This study identifies the chloroplast transporter RETICULATA as a regulator of palisade mesophyll cell division and expansion, influencing leaf air space patterning.

The paper models genotype-specific photosynthetic trait trajectories using functional data analysis to predict biomass, finding that early growth period traits most strongly influence final dry weight.

This paper develops a tunable auxin-based trans-kingdom signaling system that enables cross-species communication by engineering auxin biosynthesis and response mechanisms in different organisms.

The paper shows that CO2-concentrating nanoparticles modify photosynthesis and cell wall structure in Arabidopsis cells over time.

The paper uses forward genetics and phenotyping to identify genetic factors affecting plant cell proliferative capacity, finding distinct genetic components for different growth traits.

This study examines how genetic architecture of flowering time in Arabidopsis thaliana changes between overwintering environments and growth chambers, finding extensive gene-by-environment interaction and environment-specific genetic effects.

The study examines life-history trade-offs in Aedes aegypti across developmental stages, finding stage- and sex-specific responses to predation risk.

This study shows that the basic segment of the AtVLN4 linker bundles actin filaments and is influenced by temperature and potassium ions.

The paper identifies a specialized cell layer in rice stems that functions as a gravity sensor, distinct from the lignified endodermis, and shows its role in gravitropic responses through starch sedimentation and auxin signaling.

This study shows that NMD deficiency in Arabidopsis leads to biphasic heat tolerance, with initial tolerance due to transcriptome priming and later sensitivity linked to reduced HsfA2 function and altered gene expression.

This study identifies DCP5 as a key regulator of circadian RNA stability in Arabidopsis by modulating the decay of high-amplitude clock-controlled genes.

The paper introduces DIFFRACT, a framework that uses local fractal dimension changes in protein interaction networks to detect functional reorganization, showing its utility in identifying novel biological roles in RAVER1-deficient cells.

This study identifies a polar targeting peptide in plants and reveals its evolutionary conservation and diversification within the SOSEKI protein family.

This study identifies Putrescine-responsive feedback regulation of ADC2 in Arabidopsis mediated by 5'-UTR elements, showing translational repression and its role in Put homeostasis.

The paper identifies polar domains in Arabidopsis male and female gametophytes using conserved proteins, revealing a universal polarity system and uncovering novel polar domains.

This study identifies GSNOR1 and VDAC3 as a complex that facilitates mitophagy in plants by targeting damaged mitochondria for degradation.

The paper identifies an activation-tagging line that partially restores root hair growth in a p4h5 mutant by altering gene expression, particularly at low temperatures.