Author

Chrisopher A Jackson

New York Genome Center

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Systems Biology· 1

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Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1 Organism:yeast· 1

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David GreshamiD· 1 shared Maggie Beheler-AmassiD· 1 shared Richard BonneauiD· 1 shared

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2025-2025 · peak 1/yr

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1 shared paperSystems Biology

David GreshamORCID

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1 paper

Recent·Most cited

Dynamic Gene Regulatory Network Inference with Interpretable, Biophysically-Motivated Neural ODEs

Maggie Beheler-Amass, Chrisopher A Jackson, David Gresham, Richard Bonneau

This paper introduces in-CAHOOTTS, a neural ODE framework for inferring gene regulatory networks from dynamic single-cell data, showing it can predict gene expression and identify regulators in yeast responses to rapamycin and cell cycle progression.

bioRxiv · Sep 19, 2025 · PreprintSystems Biology