Goldfinder: Unraveling Networks of Gene Co-occurrence and Avoidance in Bacterial Pangenomes
Athina Gavriilidou, Emilian Paulitz, Christian Resl, Nadine Ziemert, Anne Kupczok, Franz Baumdicker
Goldfinder infers gene co-occurrence and co-avoidance in bacterial pangenomes by considering phylogenetic relationships, reducing spurious associations compared to existing tools.
bioRxiv · Apr 29, 2024 · PreprintBioinformatics