Author

Christopher Brown

Sanford Burnham Prebys Medical Discovery Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:imaging· 1 Approach:statistical model· 1

Frequent Co-Authors

Cynthia A. KalitaiD· 1 shared Francesca LucaiD· 1 shared Gregory A. Moyerbrailean· 1 shared Lukas CháveziD· 1 shared Michael Gratius· 1 shared Muhammad Anwaar KhalidiD· 1 shared Raneen YounisiD· 1 shared Roger Piqué-RegiiD· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Cynthia A. KalitaORCID

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2 papers

Recent·Most cited

Detecting Extrachromosomal DNA from Routine Histopathology

Muhammad Anwaar Khalid, Michael Gratius, Christopher Brown, Raneen Younis, Zahra Ahmadi, Lukas Chávez

This paper develops a deep learning framework to detect extrachromosomal DNA from histopathology images, identifying ecDNA-amplified tumours across twelve cancer types.

bioRxiv · Mar 2, 2026 · PreprintBioinformatics

QuASAR-MPRA: Accurate allele-specific analysis for massively parallel reporter assays

Cynthia A. Kalita, Gregory A. Moyerbrailean, Christopher Brown, Xiaoquan Wen, Francesca Luca, Roger Piqué-Regi

The paper develops QuASAR-MPRA to analyze allele-specific effects in MPRA data, finding 602 SNPs with significant allele-specific regulatory function in LCLs.

Bioinformatics · Sep 19, 2017Peer-reviewedBioinformatics