Author

Christopher O. Ciccolella

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Bioinformatics· 1

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:CITE-seq· 1 Research Focus:dimensionality reduction· 1 Approach:optimal transport· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

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Anna C. BelkinaiD· 1 shared Jennifer E Snyder-CappioneiD· 1 shared Josef ŠpidleniD· 1 shared Richard HalpertiD· 1 shared Rina Anno· 1 shared

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2019-2019 · peak 1/yr

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1 shared paperBioinformatics

Anna C. BelkinaORCID

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1 paper

Recent·Most cited

Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and allow analysis of large datasets

Anna C. Belkina, Christopher O. Ciccolella, Rina Anno, Richard Halpert, Josef Špidlen, Jennifer E Snyder-Cappione

The paper introduces opt-SNE, an automated t-SNE parameter selection tool that improves visualization and analysis of large single-cell datasets by optimizing early exaggeration and gradient descent settings.

Nature Communications · Nov 28, 2019Peer-reviewedBioinformatics