GPU Accelerated Adaptive Banded Event Alignment for Rapid Comparative Nanopore Signal Analysis
Hasindu Gamaarachchi, Chun Wai Lam, Gihan Jayatilaka, Hiruna Samarakoon, Jared T. Simpson, Martin A. Smith, Sri Parameswaran
This paper introduces f5c, a GPU-optimized implementation of Adaptive Banded Event Alignment for faster nanopore signal analysis and DNA methylation detection.
BMC Bioinformatics · Aug 5, 2020Peer-reviewedBioinformatics