Author

Cody Nichols

Auburn University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Jake Y. CheniD· 1 shared Qi LiiD· 1 shared Robert S. WelneriD· 1 shared Wei‐Shinn KuiD· 1 shared Zongliang YueiD· 1 shared

Activity by Year

2024-2024 · peak 1/yr

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1 shared paperBioinformatics

Jake Y. ChenORCID

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1 paper

Recent·Most cited

Toden-E: Topology-Based and Density-Based Ensembled Clustering for the Development of Super-PAG in Functional Genomics using PAG Network and LLM

Qi Li, Cody Nichols, Robert S. Welner, Jake Y. Chen, Wei‐Shinn Ku, Zongliang Yue

The paper introduces todenE, a clustering method combining topology and density-based approaches to group PAGs into Super-PAGs, improving functional representation in genomics.

bioRxiv · Oct 20, 2024 · PreprintBioinformatics