Author

D. E. Almonacid

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:experimental assay· 2 Organism:human· 2 Assay:metagenomics· 2 Approach:biophysical modeling· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1

Frequent Co-Authors

F. J. Ossandon· 2 shared J. P. Cardenas· 2 shared J. Richman· 2 shared L. Kraal· 2 shared Z. S. Apte· 2 shared A. Acedo· 1 shared A. Caughey· 1 shared A. D. Goddard· 1 shared

Activity by Year

2016-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersMicrobiology

F. J. Ossandon

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Author profile →

3 papers

Recent·Most cited

Soil Microbial Composition and Structure Allow Assessment of Biological Product Effectiveness and Crop Yield Prediction

N. Imam, I. Belda, A. J. Duehl, J. R. Doroghazi, D. E. Almonacid, V. P. Thomas, A. Acedo

This study uses soil microbial composition and structure to assess the effectiveness of a microbial inoculant on potato yield, finding fungal community structure is a better predictor of yield than bacterial structure.

bioRxiv · Feb 9, 2021 · PreprintMicrobiology

A new sequencing-based women’s health assay combining self-sampling, HPV detection and genotyping, STI detection, and vaginal microbiome analysis

E. M. Bik, S. W. Bird, J. P. Bustamante, L. E. Leon, P. A. Nieto, K. Addae, V. Alegria-Mera, C. Bravo, D. Bravo, J. P. Cardenas, A. Caughey, P. C. Covarrubias, J. Perez-Donoso, G. Gass, S. L. Gupta, , Z. S. Apte

This paper introduces a new sequencing-based women’s health assay that combines self-sampling, HPV detection and genotyping, STI detection, and vaginal microbiome analysis, showing high concordance with existing HPV tests.

bioRxiv · Nov 13, 2017Microbiology

16S rRNA Gene Sequencing as a Clinical Diagnostic Aid for Gastrointestinal-related Conditions

D. E. Almonacid, L. Kraal, F. J. Ossandon, Y. V. Budovskaya, J. P. Cardenas, J. Richman, Z. S. Apte

The paper presents a clinical test for gut microorganisms using 16S rRNA gene sequencing, accurately quantifying 28 targets and reflecting verification samples.

bioRxiv · Oct 31, 2016Microbiology