Author

D. N. Winogradoff

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2

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Approach:benchmark study· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:mechanistic / dynamical model· 1 Research Focus:protein folding & dynamics· 1 Assay:protein sequence· 1 Assay:protein structure· 1 Approach:statistical model· 1

Frequent Co-Authors

A. Aksimentiev· 2 shared C. Maffeo· 1 shared H.-Y. Chou· 1 shared K. Sarthak· 1 shared S. Myong· 1 shared Y. Ge· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 9 mutual co-author links

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2 shared papersBiophysics

A. Aksimentiev

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2 papers

Recent·Most cited

Benchmarking Molecular Dynamics Force Fields for All-Atom Simulations of Biological Condensates

K. Sarthak, D. N. Winogradoff, Y. Ge, S. Myong, A. Aksimentiev

This study benchmarks molecular dynamics force fields for simulating biological condensates, finding that combined protein and RNA force fields with a common water model best describe RNA-protein interactions and protein conformations.

bioRxiv · Feb 9, 2023Biophysics

Percolation transition determines protein size limit for passive transport through the nuclear pore complex

D. N. Winogradoff, H.-Y. Chou, C. Maffeo, A. Aksimentiev

The paper uses simulations and theory to show that protein size limits passive transport through the nuclear pore complex due to a percolation transition in the disordered mesh.

bioRxiv · Dec 17, 2021Biophysics