matOptimize: A parallel tree optimization method enables online phylogenetics for SARS-CoV-2
C. Ye, B. Thornlow, A. S. Hinrichs, D. Torvi, R. Lanfear, R. Corbett-Detig, Y. Turakhia
matOptimize improves runtime and memory efficiency for SARS-CoV-2 phylogenetic tree optimization, enabling daily maintenance of large-scale phylogenies during the pandemic.
bioRxiv · Jan 12, 2022Evolutionary Biology