Accurate analysis of short read sequencing in complex genomes: A case study using QTL-seq to target blanchability in peanut (Arachis hypogaea)
Walid Korani, Dan O’Connor, Ye Chu, Carolina M Chavarro, Carolina Ballén‐Taborda, Peggy Ozias‐Akins, Graeme C. Wright, Josh Paul Clevenger
The paper introduces Khufu, a pipeline that improves QTL-seq accuracy in complex genomes by filtering loci based on optimal short read alignment, validated using peanut and other species datasets.
bioRxiv · Mar 13, 2021 · PreprintGenomics