Ye Chu

Identification of a Major Locus for Flowering Pattern Sheds Light on Plant Architecture Diversification in Cultivated Peanut

This paper identifies a major locus controlling flowering pattern in cultivated peanut, linking a deletion in AhTFL1 to the evolution of mainstem flowering.

Accurate analysis of short read sequencing in complex genomes: A case study using QTL-seq to target blanchability in peanut (Arachis hypogaea)

The paper introduces Khufu, a pipeline that improves QTL-seq accuracy in complex genomes by filtering loci based on optimal short read alignment, validated using peanut and other species datasets.

Genotypic characterization of the U.S. peanut core collection

The paper genotypes a peanut core collection, identifies genetic clusters, and links them to botanical varieties and biogeography.

Major QTLs for resistance to early and late leaf spot diseases are identified on chromosomes 3 and 5 in peanut (Arachis hypogaea)

The paper identifies major QTLs for resistance to early and late leaf spot diseases on chromosomes 3 and 5 in peanut, showing genetic independence and potential for marker-assisted breeding.

Machine learning as an effective method for identifying true SNPs in polyploid plants

This paper develops machine learning models to identify true SNPs in polyploid plants, achieving high accuracy using real and simulated data.