Author

Daniel Alfonsetti

MIT Computer Science and Artificial Intelligence Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:metagenomics· 1 Approach:statistical model· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Ashlee M. EarliD· 1 shared Bonnie BergeriD· 1 shared Colin J. WorbyiD· 1 shared Georg Kurt GerberiD· 1 shared Karen DodsoniD· 1 shared Lucas R. van DijkiD· 1 shared Philippe N. AzimzadehiD· 1 shared Sawal Acharya· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Ashlee M. EarlORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

Strain Tracking with Uncertainty Quantification

Younhun Kim, Colin J. Worby, Sawal Acharya, Lucas R. van Dijk, Daniel Alfonsetti, Zackary Gromko, Philippe N. Azimzadeh, Karen Dodson, Georg Kurt Gerber, Scott J. Hultgren, Ashlee M. Earl, Bonnie Berger, Travis E. Gibson

ChronoStrain tracks low-abundance microbial strains over time with uncertainty quantification, outperforming existing methods on real and synthetic data.

Nature Microbiology · May 6, 2025Peer-reviewedBioinformatics