PatHoST: weakly supervised reconstruction of pathogen spatial distributions from host transcriptomes
Federico Di Marco, Francesca De Nicola, Gaia Saldarini, Daniela Maria Cirillo, Nicola Ivan Lorè, Alex Graudenzi, Stefano de Pretis
PatHoST reconstructs pathogen spatial distributions from host transcriptomes using weakly supervised learning, showing improved detection in both experimental and human SARS-CoV-2 data.
bioRxiv · Oct 30, 2026 · PreprintBioinformatics