Insitutype: likelihood-based cell typing for single cell spatial transcriptomics
Patrick J. Danaher, Edward J. Zhao, Zhi Gang Yang, David Ross, Mark Gregory, Zach Reitz, Tae Kyoung Kim, Sarah K. Baxter, Shaun W. Jackson, Shanshan He, Dave Henderson, Joseph Beechem
Insitutype types cells in spatial transcriptomics with a likelihood model over every expression value, admits image and neighbourhood priors, and is reported to cluster millions of cells quickly.
bioRxiv · Oct 19, 2022 · PreprintBioinformatics