Author

Davide Rafael Lagoa

Labbels

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 2 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Organism:multiple species· 1 Organism:plant (other)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Emanuel CunhaiD· 3 shared Óscar DiasiD· 3 shared Diogo LimaiD· 2 shared Miguel RochaiD· 2 shared Ana Barbosa· 1 shared Christopher S. HenryiD· 1 shared Eugénio Campos FerreiraiD· 1 shared Fernando CruziD· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersBioinformatics

Emanuel CunhaORCID

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Author profile →

3 papers

Recent·Most cited

merlin v4.0: an updated platform for the reconstruction of high-quality genome-scale metabolic models

João Capela, Davide Rafael Lagoa, Rúben Rodrigues, Emanuel Cunha, Fernando Cruz, Ana Barbosa, José Roberto Henrique Bastos, Diogo Lima, Eugénio Campos Ferreira, Miguel Rocha, Óscar Dias

merlin v4.0 improves genome-scale metabolic model reconstruction with new algorithms and tools, supporting multiple organisms and offering competitive performance.

Nucleic Acids Research · Jun 13, 2022Peer-reviewedBioinformatics

TranSyT, an innovative framework for identifying transport systems

Davide Rafael Lagoa, José P. Faria, Filipe Liu, Emanuel Cunha, Christopher S. Henry, Óscar Dias

TranSyT automates the integration of transport reactions into genome-scale metabolic models by compiling curated transporter data and providing rapid genome annotation.

bioRxiv · Apr 29, 2021 · PreprintBioinformatics

The first multi-tissue diel genome-scale metabolic model of a woody plant highlights the suberin biosynthesis pathways in Quercus suber

Emanuel Cunha, Miguel Silva, Inês Chaves, Huseyin Demirci, Davide Rafael Lagoa, Diogo Lima, Miguel Rocha, Isabel Rocha, Óscar Dias

This paper develops the first multi-tissue diel genome-scale metabolic model for Quercus suber, highlighting suberin biosynthesis pathways and enabling analysis of tissue interactions.

bioRxiv · Mar 9, 2021 · PreprintSystems Biology