Author

Miguel Silva

LabbelsORCID 0000-0002-8271-9910Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Synthetic Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:bacteria (other)· 2 Assay:whole-genome sequencing· 2 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:plant (other)· 1 Research Focus:protein design· 1 Assay:proteomics· 1

Frequent Co-Authors

Emanuel CunhaiD· 2 shared Óscar DiasiD· 2 shared Aleksandra BigosiD· 1 shared Alexandre OliveiraiD· 1 shared Barbora HrnčířováiD· 1 shared Bartłomiej SurpetaiD· 1 shared Cristiana FariaiD· 1 shared Davide Rafael Lagoa· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersBioinformatics

Emanuel CunhaORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Engineering Binding Efficiency and Interaction Stability of a Thermostable Cohesin-Dockerin Pair on the Bacterial Cell Surface

Barbora Hrnčířová, Aleksandra Bigos, Bartłomiej Surpeta, Miguel Silva, Jan Brezovský, Pavel Dvořák

The paper improves the binding efficiency and interaction stability of thermophilic cohesin-dockerin pairs on bacterial cell surfaces using computational and experimental methods.

bioRxiv · Aug 10, 2026 · PreprintSynthetic Biology

An updated genome-scale model for Xylella fastidiosa subsp. pauca De Donno

Alexandre Oliveira, Emanuel Cunha, Miguel Silva, Cristiana Faria, Óscar Dias

The paper updates a genome-scale metabolic model for Xylella fastidiosa subsp. pauca, validating it against experimental data for aerobic metabolism and gum production.

bioRxiv · Nov 28, 2022 · PreprintBioinformatics

The first multi-tissue diel genome-scale metabolic model of a woody plant highlights the suberin biosynthesis pathways in Quercus suber

Emanuel Cunha, Miguel Silva, Inês Chaves, Huseyin Demirci, Davide Rafael Lagoa, Diogo Lima, Miguel Rocha, Isabel Rocha, Óscar Dias

This paper develops the first multi-tissue diel genome-scale metabolic model for Quercus suber, highlighting suberin biosynthesis pathways and enabling analysis of tissue interactions.

bioRxiv · Mar 9, 2021 · PreprintSystems Biology