Author

Dmitri Parkhomchuk

German Center for Infection Research

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:bacteria (other)· 1 Assay:long-read sequencing· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Alexey Shadrin· 1 shared Alice C. McHardy· 1 shared Alice Carolyn McHardyiD· 1 shared Andreas BremgesiD· 1 shared

Activity by Year

2015-2017 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 2 mutual co-author links

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1 shared paperEvolutionary Biology

Alexey Shadrin

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2 papers

Recent·Most cited

Fast and memory-efficient noisy read overlapping with KD-trees

Dmitri Parkhomchuk, Andreas Bremges, Alice Carolyn McHardy

The paper introduces a memory-efficient algorithm for detecting read overlaps using KD-trees and tetramers, achieving lower memory usage than existing methods on bacterial sequencing data.

bioRxiv · Jul 21, 2017 · PreprintBioinformatics

Genetic recombination as DNA repair

Dmitri Parkhomchuk, Alexey Shadrin, Alice C. McHardy

The paper develops a population genetic model showing that recombination increases population fitness by maintaining allele frequency biases, compensating its costs through enhanced genomic and phenotypic complexity.

bioRxiv · Dec 13, 2015 · PreprintEvolutionary Biology