Author

Alice C. McHardy

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:development & morphogenesis· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1 Research Focus:metabolism & bioenergetics· 1

Frequent Co-Authors

Alexander J. Nederbragt· 1 shared Alexey Shadrin· 1 shared Andreas Bremges· 1 shared Ave Tooming-Klunderud· 1 shared Dmitri Parkhomchuk· 1 shared Jeremy A. Frank· 1 shared Johannes Gescher· 1 shared Philipp C. Münch· 1 shared

Activity by Year

2015-2017 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperBioinformatics

Alexander J. Nederbragt

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Author profile →

3 papers

Recent·Most cited

MicrobiologybioRxivPreprintFeb 17, 2017

Laboratory cultivation of acidophilic nanoorganisms. Physiological and bioinformatic dissection of a stable laboratory co-culture.

Susanne Krause, Andreas Bremges, Philipp C. Münch…·Johannes Gescher

This paper reports the successful cultivation of a stable ARMAN co-culture and identifies a new genus within the Thermoplasmatales order.

DOI 10.1101/103150

metagenomicsexperimental assay

𝕏 PostBluesky

Evolutionary BiologybioRxivPreprintDec 13, 2015

Genetic recombination as DNA repair

Dmitri Parkhomchuk, Alexey Shadrin, Alice C. McHardy

The paper develops a population genetic model showing that recombination increases population fitness by maintaining allele frequency biases, compensating its costs through enhanced genomic and phenotypic complexity.

DOI 10.1101/034280

statistical model

𝕏 PostBluesky

BioinformaticsbioRxivSep 16, 2015

Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data

Jeremy A. Frank, Yao Pan, Ave Tooming-Klunderud…·Phillip B. Pope

The paper evaluates the use of PacBio CCS reads for metagenomic assembly and taxonomic binning, showing improved contig length and binning accuracy compared to Illumina HiSeq data.

DOI 10.1038/srep25373

long-read sequencingmetagenomics

𝕏 PostBluesky