Author

Dominika Matus

University of Freiburg

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Frank HutteriD· 2 shared Frederic RungeiD· 2 shared Jörg K. H. FrankeiD· 2 shared Rolf BackofeniD· 2 shared Lars Gerne· 1 shared Michaël UhliD· 1 shared Ryan KoeksaliD· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 19 mutual co-author links

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2 shared papersBioinformatics

Frank HutterORCID

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2 papers

Recent·Most cited

RNA-Protein Interaction Classification via Sequence Embeddings

Dominika Matus, Frederic Runge, Jörg K. H. Franke, Lars Gerne, Michaël Uhl, Frank Hutter, Rolf Backofen

This work introduces a dataset and a transformer-based model for classifying ncRNA-protein interactions, showing strong performance compared to existing methods.

bioRxiv · Nov 8, 2024 · PreprintBioinformatics

RNAformer: A Simple yet Effective Model for Homology-Aware RNA Secondary Structure Prediction

Jörg K. H. Franke, Frederic Runge, Ryan Koeksal, Dominika Matus, Rolf Backofen, Frank Hutter

RNAformer predicts RNA secondary structure directly from sequence using a simple axial-attention model, achieving state-of-the-art performance while addressing homology concerns.

bioRxiv · Feb 12, 2024 · PreprintBioinformatics