Ryan Koeksal

PGRanker improves Mendelian gene prioritization by integrating phenotype data with gene networks using graph learning, achieving higher recall and better ranking of causal genes.

This paper introduces a foundation model for CRISPR array detection that works without metagenomic assembly, achieving high accuracy on both short and long sequences.

RNAformer predicts RNA secondary structure directly from sequence using a simple axial-attention model, achieving state-of-the-art performance while addressing homology concerns.