Author

Drake Palmer

University of Pittsburgh

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Assay:ChIP-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

Hatice U. OsmanbeyogluiD· 2 shared April SaganiD· 1 shared Eleonora SementinoiD· 1 shared Joseph R. TestaiD· 1 shared Michael John BecichiD· 1 shared Russell S. SchwartziD· 1 shared Xiaojun MaiD· 1 shared Xinghua LuiD· 1 shared

Activity by Year

2022-2022 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 20 mutual co-author links

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2 shared papersBioinformatics

Hatice U. OsmanbeyogluORCID

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2 papers

Recent·Most cited

Isolated BAP1 loss in malignant pleural mesothelioma predicts immunogenicity with implications for immunotherapeutic response

Hatice U. Osmanbeyoglu, Drake Palmer, April Sagan, Eleonora Sementino, Michael John Becich, Joseph R. Testa

The paper identifies BAP1 loss as a predictor of immunogenicity and potential response to PD-1 therapy in malignant pleural mesothelioma.

Cancers · Nov 16, 2022Peer-reviewedBioinformatics

Interpretable deep learning for chromatin-informed inference of transcriptional programs driven by somatic alterations across cancers

Yifeng Tao, Xiaojun Ma, Drake Palmer, Russell S. Schwartz, Xinghua Lu, Hatice U. Osmanbeyoglu

The paper introduces CITRUS, a deep learning model that infers transcriptional programs influenced by somatic alterations across 17 cancer types using genomic, transcriptomic, and epigenomic data from The Cancer Genome Atlas.

Nucleic Acids Research · Sep 30, 2022Peer-reviewedBioinformatics