E. Tannier

PhylteR: efficient identification of outlier sequences in phylogenomic datasets

PhylteR identifies outlier sequences in phylogenomic datasets using DISTATIS, improving gene tree concordance with species trees.

Host-symbiont-gene phylogenetic reconciliation

This paper introduces a probabilistic model for reconciling three levels of biological organization to study host-symbiont-gene coevolution and evaluates it on simulated and real data.

Ghost lineages can invalidate or even reverse findings regarding gene flow

The paper shows that ignoring ghost lineages can lead to incorrect conclusions about gene flow in evolutionary studies.

Ghost lineages highly influence the interpretation of introgression tests

The paper shows that ghost lineages can lead to incorrect identification of gene flow donors and recipients in introgression tests using simulated data.

Long-range promoter-enhancer contacts are conserved during evolution and contribute to gene expression robustness

The paper compares promoter-enhancer contacts in mouse and human to show evolutionary conservation and its role in gene expression robustness.

Gene transfers, like fossils, can date the Tree of Life

The paper uses lateral gene transfer patterns to date the Tree of Life, showing they are as informative as fossils for microbial lineages.