Author

E. Yashiro

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 2 Microbiology· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 4 Approach:statistical model· 4 Research Focus:clustering· 3 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:development & morphogenesis· 1 Assay:DNA methylation· 1

Frequent Co-Authors

A. Guisan· 2 shared C. V. W. Seppey· 2 shared E. Lara· 2 shared M. S. Dueholm· 2 shared O. Broennimann· 2 shared P. H. Nielsen· 2 shared A. A. Hansen· 1 shared A. A. Hoffmann· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersEcology

A. Guisan

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Landscape structure is a key driver of protist diversity along elevation gradients in the Swiss Alps

C. V. W. Seppey, E. Lara, O. Broennimann, A. Guisan, L. Malard, E. Yashiro, B. Fournier

The paper assesses how landscape structure affects soil protist diversity in Swiss Alps meadows, finding that landscape metrics significantly influence alpha and beta diversity.

bioRxiv · Apr 13, 2022 · PreprintEcology

Population bottlenecks constrain host microbiome diversity and genetic variation impeding fitness

M. Orsted, E. Yashiro, A. A. Hoffmann, T. N. Kristensen

This study shows that population bottlenecks reduce both host genetic variation and microbiome diversity, which together impair host fitness and adaptability.

bioRxiv · Jul 4, 2021Evolutionary Biology

Characterizing the growing microorganisms at species level in 46 anaerobic digesters at Danish wastewater treatment plants: A six-year survey on microbiome structure and key drivers

C. Jiang, M. Peces, M. H. Andersen, S. Kucheryavskiy, M. Nierychlo, E. Yashiro, K. S. Andersen, R. H. Kirkegaard, L. Hao, J. Hoegh, A. A. Hansen, M. S. Dueholm, P. H. Nielsen

This study characterizes the microbial communities in 46 anaerobic digesters over six years, identifying key drivers shaping microbiome structure and highlighting the role of immigration in bacterial diversity.

Water Research · Apr 1, 2021Peer-reviewedMicrobiology

Generation of comprehensive ecosystems-specific reference databases with species-level resolution by high-throughput full-length 16S rRNA gene sequencing and automated taxonomy assignment (AutoTax)

M. S. Dueholm, K. S. Skytte Andersen, S. J. J. McIlroy, J. M. Kristensen, E. Yashiro, S. M. M. Karst, M. Albertsen, P. H. Nielsen

The paper generates ecosystem-specific 16S rRNA gene reference databases with high-identity sequences and introduces AutoTax for automated taxonomy assignment, improving classification accuracy for microbial communities.

bioRxiv · Jun 10, 2020Microbiology

Soil protist diversity in the Swiss western Alps is better predicted by topo-climatic than by edaphic variables

C. V. W. Seppey, O. Broennimann, A. Buri, E. Yashiro, E. Pinto-Figueroa, D. Singer, Q. Blandenier, E. A. D. Mitchell, H. Niculita Hirzel, A. Guisan, E. Lara

The paper compares topo-climatic and edaphic variables in predicting soil protist diversity in the Swiss western Alps, finding topo-climatic variables generally have better predictive power.

Journal of Biogeography · Dec 1, 2019Peer-reviewedEcology