Author

Enrico Borba

California Institute of Technology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:imaging· 2 Research Focus:software / tool· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:graph neural network· 1 Organism:human· 1

Frequent Co-Authors

David Van ValeniD· 2 shared Edward Pao· 2 shared Erick MoeniD· 2 shared Morgan Sarah SchwartziD· 2 shared William GrafiD· 2 shared Brian Chang· 1 shared Dylan Bannon· 1 shared Erik Osterman· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersBioinformatics

David Van ValenORCID

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2 papers

Recent·Most cited

Caliban: Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning

Morgan Sarah Schwartz, Erick Moen, Geneva Miller, Tom Dougherty, Enrico Borba, Rachel Ding, William Graf, Edward Pao, David Van Valen

Human-in-the-loop labeling of nuclear live-cell movies produced DynamicNuclearNet (over 2,621 divisions); Caliban, a tracker trained on it, beat four published trackers at division detection.

bioRxiv · Aug 7, 2024 · PreprintBioinformatics✦ In-depth digest

DeepCell Kiosk: Scaling deep learning-enabled cellular image analysis with Kubernetes

Dylan Bannon, Erick Moen, Morgan Sarah Schwartz, Enrico Borba, Takamasa Kudo, Noah F. Greenwald, Vibha Vijayakumar, Brian Chang, Edward Pao, Erik Osterman, William Graf, David Van Valen

DeepCell Kiosk scales deep learning workflows for large imaging datasets, processing 106 images in ~5.5 hours at a low cost.

Nature Methods · Jan 1, 2021Peer-reviewedSystems Biology