neissflow: Streamlining Genomic Epidemiology of Neisseria gonorrhoeae with Nextflow
Kathryn Morin, Ethan E. Hetrick, Apurva Shrivastava, Eric Tran, John C. Cartee, Katherine Hebrank, Kim M. Gernert, Matthew W. Schmerer, Sandeep J. Joseph
neissflow is a Nextflow pipeline for analyzing Neisseria gonorrhoeae genomes, achieving high accuracy in species identification, AMR profiling, and phylogenetic analysis.
bioRxiv · Jul 23, 2026 · PreprintBioinformatics