Rapid genotyping of viral samples using Illumina short-read sequencing data
Alex Váradi, Eszter Kaszab, Gábor Kardos, Eszter Prépost, Krisztina Szarka, Levente Laczkó
This paper presents a pipeline for rapid and accurate reference-based genotyping of viral samples using Illumina short-read sequencing data, showing reliable consensus genome reconstruction without manual curation.
bioRxiv · Mar 21, 2022 · PreprintBioinformatics