Author

Evan Holmes

Boston University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alzheimer’s Disease Neuroimaging Initiative· 1 shared Anthony P. C. BrowniD· 1 shared Christopher M. RoyeriD· 1 shared Hong JiiD· 1 shared Howard Fan· 1 shared Jessica McClintockiD· 1 shared Jiwei Zhang· 1 shared Michael R. SilversteiniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Alzheimer’s Disease Neuroimaging Initiative

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Reproducible Tools and Enhanced Computational Workflows for Batch Effect Evaluation of High-Throughput Data Using BatchQC

Jessica McClintock, Jiwei Zhang, Xinzhou Ge, Howard Fan, Yaoan Leng, Michael R. Silverstein, Regan D. Conrad, Zhaorong Li, Evan Holmes, Solomon Joseph, Sean Lu, Russell Taki Shinohara, Tenglong Li, William Evan Johnson, Alzheimer’s Disease Neuroimaging Initiative

The paper introduces BatchQC, an R package for assessing and correcting batch effects in high-throughput data with reproducible tools and workflows.

bioRxiv · Feb 13, 2026 · PreprintBioinformatics

Persistent transcriptomic changes following repeated exposure to wood smoke in non-human primate airway epithelial cells

Evan Holmes, Anthony P. C. Brown, Sweeney Elston, Christopher M. Royer, Hong Ji

This study identifies persistent transcriptomic and epigenomic changes in non-human primate airway epithelial cells after wood smoke exposure, revealing lasting molecular effects despite no visible histological changes.

Current Zoology · Jan 1, 2026Peer-reviewedGenomics