Author

Fan Shen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 2 Assay:protein structure· 2 Research Focus:protein structure prediction· 2 Assay:protein sequence· 1 Research Focus:software / tool· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Guolin KeiD· 2 shared Linfeng ZhangiD· 2 shared Weijie CheniD· 2 shared Xuyang LiuiD· 2 shared Ziyao LiiD· 2 shared Han WeniD· 1 shared Hangrui Bi· 1 shared Shuwen YangiD· 1 shared

Activity by Year

2022-2022 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 26 mutual co-author links

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2 shared papersBioinformatics

Guolin KeORCID

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2 papers

Recent·Most cited

Uni-Fold Symmetry: Harnessing Symmetry in Folding Large Protein Complexes

Ziyao Li, Shuwen Yang, Xuyang Liu, Weijie Chen, Han Wen, Fan Shen, Guolin Ke, Linfeng Zhang

UF-Symmetry improves prediction of large protein complexes by leveraging symmetry, achieving faster computation and better accuracy than existing methods.

bioRxiv · Aug 30, 2022 · PreprintBioinformatics

Uni-Fold: An Open-Source Platform for Developing Protein Folding Models beyond AlphaFold

Ziyao Li, Xuyang Liu, Weijie Chen, Fan Shen, Hangrui Bi, Guolin Ke, Linfeng Zhang

PyTorch reimplementation of AlphaFold and AlphaFold-Multimer with training code, retrained from scratch to equal or better accuracy, about 2.2 times faster training and roughly 2% higher multimer TM-Score.

bioRxiv · Aug 4, 2022 · PreprintBioinformatics✦ In-depth digest