Inference of transmission network structure from HIV phylogenetic trees
Federica Giardina, Ethan Obie Romero-Severson, Jan Albert, Tom Britton, Thomas Kenneth Leitner
This study uses approximate Bayesian computation to infer transmission network structures from HIV phylogenetic trees, showing that within-host evolution affects network inference and that early epidemic stages allow better differentiation of contact networks.
bioRxiv · Jun 25, 2016Epidemiology