Author

Fen Xie

10X Genomics (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Bioinformatics· 1

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Research Focus:cell type annotation· 1 Organism:human· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Emre Erhan· 1 shared Erik M LehnertiD· 1 shared Fedor GrabiD· 1 shared Govinda M. Kamath· 1 shared Jeff Mellen· 1 shared Kevin Lydon· 1 shared Kristian CibulskisiD· 1 shared Mehrtash BabadiiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Emre Erhan

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1 paper

Recent·Most cited

Accelerating scRNA-seq analysis: automated cell type annotation using representation learning and vector search

Stephen R. Williams, Fedor Grab, Govinda M. Kamath, Yerdos A. Ordabayev, Jeff Mellen, Patrick Roelli, Kristian Cibulskis, Erik M Lehnert, Fen Xie, Miguel Covarrubias, Nur-Taz Rahman, Timothy L. Tickle, Emre Erhan, Nicolas Malfroy-Camine, Kevin Lydon, , Nigel F. Delaney

This paper introduces a service for automated cell type annotation in scRNA-seq data using reverse search against a curated database, providing both fine-grained and coarse annotations without relying on predefined markers.

bioRxiv · Oct 6, 2025 · PreprintBioinformatics