Author

Emre Erhan

10X Genomics (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Organism:human· 1 Assay:long-read sequencing· 1 Assay:scRNA-seq· 1 Research Focus:sequence-to-function modeling· 1

Frequent Co-Authors

Erik M LehnertiD· 1 shared Fedor GrabiD· 1 shared Fen Xie· 1 shared Govinda M. Kamath· 1 shared Hamid Mohamadi· 1 shared İnanç BiroliD· 1 shared Jeff Mellen· 1 shared Jeffery Tse· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Erik M LehnertORCID

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2 papers

Recent·Most cited

Accelerating scRNA-seq analysis: automated cell type annotation using representation learning and vector search

Stephen R. Williams, Fedor Grab, Govinda M. Kamath, Yerdos A. Ordabayev, Jeff Mellen, Patrick Roelli, Kristian Cibulskis, Erik M Lehnert, Fen Xie, Miguel Covarrubias, Nur-Taz Rahman, Timothy L. Tickle, Emre Erhan, Nicolas Malfroy-Camine, Kevin Lydon, , Nigel F. Delaney

This paper introduces a service for automated cell type annotation in scRNA-seq data using reverse search against a curated database, providing both fine-grained and coarse annotations without relying on predefined markers.

bioRxiv · Oct 6, 2025 · PreprintBioinformatics

Improving on hash-based probabilistic sequence classification using multiple spaced seeds and multi-index Bloom filters

Justin Chu, Hamid Mohamadi, Emre Erhan, Jeffery Tse, Readman Chiu, Sarah K. Yeo, İnanç Birol

The paper introduces a multi-index Bloom filter for alignment-free sequence classification, showing improved sensitivity and efficiency over existing methods in read binning and taxonomic assignment.

bioRxiv · Oct 5, 2018 · PreprintBioinformatics