P-DOR, an easy-to-use pipeline to reconstruct outbreaks using pathogen genomics
G. Batisti Biffignandi, G. Bellinzona, G. Petazzoni, D. Sassera, G. V. Zuccotti, C. Bandi, F. Baldanti, F. Comandatore, S. Gaiarsa
P-DOR is a pipeline that uses pathogen genomics to reconstruct outbreaks by analyzing SNP-based phylogenies and metadata, providing a user-friendly tool for epidemiological investigations.
bioRxiv · May 30, 2023 · PreprintMicrobiology