Author

HGSVC Functional Analysis Working Group

Yale University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:Hi-C· 2 Organism:human· 2 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Approach:statistical model· 1

Frequent Co-Authors

Chong LiiD· 2 shared Evan E. EichleriD· 2 shared Mark ChaissoniD· 2 shared Xinghua Mindy ShiiD· 2 shared Charles LeeiD· 1 shared Jan O. KorbeliD· 1 shared Lingbin NiiD· 1 shared Marc Jan BonderiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Chong LiORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

TRUHiC: A TRansformer-embedded U-2 Net to enhance Hi-C data for 3D chromatin structure characterization

Chong Li, Mohammad Erfan Mowlaei, Lingbin Ni, HGSVC Functional Analysis Working Group, Mark Chaisson, Evan E. Eichler, Vincenzo Carnevale, Sudhir Kumar, Xinghua Mindy Shi

TRUHiC enhances low-resolution Hi-C data using deep generative modeling to improve 3D chromatin structure characterization across cell lines and species.

bioRxiv · Mar 29, 2025 · PreprintBioinformatics

A comprehensive catalog of 3D genome organization in diverse human genomes facilitates understanding of the impact of structural variation on chromatin structure

Chong Li, Marc Jan Bonder, Sabriya A. Syed, Matthew Jensen, HGSVC Functional Analysis Working Group, Mark Gerstein, Michael C. Zody, Mark Chaisson, Michael E. Talkowski, Tobias Marschall, Jan O. Korbel, Evan E. Eichler, Charles Lee, Xinghua Mindy Shi

The paper develops a Hi-C analysis pipeline to catalog TADs and loops in human genomes and quantifies the impact of SVs on chromatin structure and gene expression.

Genome Research · Dec 1, 2024Peer-reviewedGenomics