Author

Chong Li

Temple UniversityORCID 0000-0003-1949-4074Unclaimed ORCID profile · follow to get notified of new preprints

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Chong Li5 papers · Southwest University

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:Hi-C· 3 Organism:human· 3 Research Focus:database / resource· 2 Approach:statistical model· 2 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Evan E. EichleriD· 3 shared Mark ChaissoniD· 3 shared Xinghua Mindy ShiiD· 3 shared Charles LeeiD· 2 shared HGSVC Functional Analysis Working Group· 2 shared Jan O. KorbeliD· 2 shared Marc Jan BonderiD· 2 shared Mark GersteiniD· 2 shared

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2024-2025 · peak 2/yr

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10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Evan E. EichlerORCID

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3 papers

Recent·Most cited

GenomicsNaturePeer-reviewedJul 23, 2025

✦ In-depth digest

Complex genetic variation in nearly complete human genomes

Glennis A. Logsdon, Peter Ebert, Peter A. Audano…·Tobias Marschall

Hybrid HiFi/ultra-long ONT assemblies of 65 diverse humans yield 130 haplotypes, 1,246 complete centromeres, and a pangenome panel enabling short-read genome inference at median QV 45.

138 citationstop 1%

humanlong-read sequencing

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BioinformaticsbioRxivPreprintMar 29, 2025

TRUHiC: A TRansformer-embedded U-2 Net to enhance Hi-C data for 3D chromatin structure characterization

Chong Li, Mohammad Erfan Mowlaei, Lingbin Ni…·Xinghua Mindy Shi

TRUHiC enhances low-resolution Hi-C data using deep generative modeling to improve 3D chromatin structure characterization across cell lines and species.

DOI 10.1101/2025.03.29.646133

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GenomicsGenome ResearchPeer-reviewedDec 1, 2024

A comprehensive catalog of 3D genome organization in diverse human genomes facilitates understanding of the impact of structural variation on chromatin structure

Chong Li, Marc Jan Bonder, Sabriya A. Syed…·Xinghua Mindy Shi

The paper develops a Hi-C analysis pipeline to catalog TADs and loops in human genomes and quantifies the impact of SVs on chromatin structure and gene expression.

2 citations

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