Author

Hikaru Matsuoka

RIKEN Center for Advanced Intelligence Project

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:plant (other)· 1 Approach:simulation· 1

Frequent Co-Authors

Gen TamiyaiD· 2 shared Jun TakayamaiD· 1 shared Takashi AkagiiD· 1 shared Yurii KotsariD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 4 mutual co-author links

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2 shared papersEvolutionary Biology

Gen TamiyaORCID

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2 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintMay 26, 2026

Genomic properties representing plant sex chromosome evolution interpreted with genome language models

Takashi Akagi, Hikaru Matsuoka, Jun Takayama, Gen Tamiya

The paper uses a genome language model to analyze plant Y chromosomes from Silene and Humulus, identifying shared genomic features and evolutionary patterns despite structural divergence.

DOI 10.64898/2026.05.25.727704

plant (other)whole-genome sequencing

𝕏 PostBluesky

GeneticsbioRxivPreprintDec 29, 2023

The evolution of fitness during range expansions in different dimensions

Yurii Kotsar, Hikaru Matsuoka, Gen Tamiya

This paper introduces a simulation tool for range expansions in different dimensions and analyzes fitness dynamics in 3D expansions for the first time.

DOI 10.1101/2023.12.29.573608

simulationbenchmarking

𝕏 PostBluesky