Author

Hitesh Kandarpa

Indian Institute of Technology Madras

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:long-read sequencing· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Aldis DanieliD· 1 shared Gino PrasadiD· 1 shared Howard Y. ChangiD· 1 shared Ivy Tsz-Lo WongiD· 1 shared Jens LuebeckiD· 1 shared Kaiyuan ZhuiD· 1 shared Karthik RiD· 1 shared King L. HungiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperGenomics

Aldis DanielORCID

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2 papers

Recent·Most cited

Prediction of Systemic Lupus Erythematosus from Genotype and Gene-Expression Data: Batch Correction and Leakage Free Evaluation

Vasudha Kannan, Karthik R, Aldis Daniel, Hitesh Kandarpa

This paper evaluates the prediction of SLE using genotype and gene-expression data with batch correction and leakage-free cross-validation, finding that expression data perform better than SNPs but face confounding issues.

bioRxiv · Oct 26, 2026 · PreprintGenomics

Fast and accurate resolution of ecDNA sequence using Cycle-Extractor

Mahsa Faizrahnemoon, Jens Luebeck, King L. Hung, Suhas S.P. Rao, Gino Prasad, Ivy Tsz-Lo Wong, Hitesh Kandarpa, Matthew G. Jones, Paul S. Mischel, Howard Y. Chang, Kaiyuan Zhu, Vineet Bafna

Cycle-Extractor accurately reconstructs ecDNA structures from both short- and long-read sequencing data, outperforming existing methods in speed and completeness.

bioRxiv · Apr 15, 2026 · PreprintBioinformatics