Author

Mahsa Faizrahnemoon

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Organism:human· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Gino PrasadiD· 1 shared Hitesh Kandarpa· 1 shared Howard Y. ChangiD· 1 shared Ivy Tsz-Lo WongiD· 1 shared Jens LuebeckiD· 1 shared Kaiyuan ZhuiD· 1 shared King L. HungiD· 1 shared Matthew G. JonesiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Gino PrasadORCID

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1 paper

Recent·Most cited

Fast and accurate resolution of ecDNA sequence using Cycle-Extractor

Mahsa Faizrahnemoon, Jens Luebeck, King L. Hung, Suhas S.P. Rao, Gino Prasad, Ivy Tsz-Lo Wong, Hitesh Kandarpa, Matthew G. Jones, Paul S. Mischel, Howard Y. Chang, Kaiyuan Zhu, Vineet Bafna

Cycle-Extractor accurately reconstructs ecDNA structures from both short- and long-read sequencing data, outperforming existing methods in speed and completeness.

bioRxiv · Apr 15, 2026 · PreprintBioinformatics