Author

Hong-Ye Lin

National Taiwan University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genetic & Genomic Medicine· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Approach:statistical model· 3 Research Focus:variant calling· 3 Assay:whole-genome sequencing· 3 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:GWAS / association mapping· 1

Frequent Co-Authors

Chien‐Yu CheniD· 3 shared Chia‐Lang HsuiD· 2 shared Hui-Wen Chuang· 2 shared Jacob Shujui HsuiD· 2 shared Pei‐Lung CheniD· 2 shared Tsung-Kai HungiD· 2 shared Ya‐Chien YangiD· 2 shared Ching-Jim Lin· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Chien‐Yu ChenORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Graph-KIR: Graph-based KIR Copy Number Estimation and Allele Calling Using Short-read Sequencing Data

Hong-Ye Lin, Wang Ting-jian, Tsung-Kai Hung, Hui-Wen Chuang, Ching-Jim Lin, Chia‐Lang Hsu, Ya‐Chien Yang, Chien‐Yu Chen

Graph-KIR estimates KIR gene copy numbers and calls 7-digit alleles from WGS data with high accuracy, outperforming existing tools.

Bioinformatics · Jul 1, 2026Peer-reviewedBioinformatics

Genetic Diversity and Structural Complexity of the Killer-Cell Immunoglobulin-Like Receptor Gene Complex: A Comprehensive Analysis using Human Pangenome Assemblies

Tsung-Kai Hung, Wan-Chi Liu, Sheng-Kai Lai, Hui-Wen Chuang, Yi-Che Lee, Hong-Ye Lin, Chia‐Lang Hsu, Chien‐Yu Chen, Ya‐Chien Yang, Jacob Shujui Hsu, Pei‐Lung Chen

The paper develops a tool to analyze KIR gene diversity using pangenome assemblies and identifies novel alleles and structural variants in human genomes.

Genome Research · Aug 1, 2024Peer-reviewedGenomics

Complete genomic profiles of 1,496 Taiwanese reveal curated medical insights

Dung-Chi Wu, Jacob Shujui Hsu, Chien‐Yu Chen, Shang-Hung Shih, Jen-Feng Liu, Ya-Chen Tsai, Tung-Lin Lee, Wei‐An Chen, Yi-Hsuan Tseng, Yi-Chung Lo, Hong-Ye Lin, Yi-Chieh Chen, Jingyi Chen, Darby Tien-Hao Chang, Weihong Guo, , Pei‐Lung Chen

This study reanalyzes 1,496 Taiwanese whole genome sequences to identify novel variants and clinically relevant genetic markers with potential medical implications.

medRxiv · Dec 23, 2021 · PreprintGenetic & Genomic Medicine