Author

Hooshmand Shokri

Columbia University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 2

Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Assay:electronic health records· 2 Organism:non-human primate· 2 Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:machine learning (classical)· 1 Approach:simulation· 1

Frequent Co-Authors

David CarlsoniD· 2 shared E. J. ChichilniskyiD· 2 shared Eleanor Batty· 2 shared Georges A. GoetziD· 2 shared JinHyung LeeiD· 2 shared Liam PaninskiiD· 2 shared Alexandra KlingiD· 1 shared Catalin MitelutiD· 1 shared

Activity by Year

2017-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersNeuroscience

David CarlsonORCID

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2 papers

Recent·Most cited

YASS: Yet Another Spike Sorter applied to large-scale multi-electrode array recordings in primate retina

JinHyung Lee, Catalin Mitelut, Hooshmand Shokri, Ian Kinsella, Nishchal Dethe, Shenghao Wu, Kevin Li, Eduardo Blancas Reyes, Denis Turcu, Eleanor Batty, Young Joon Kim, Nora Brackbill, Alexandra Kling, Georges A. Goetz, E. J. Chichilnisky, , Liam Paninski

YASS sorts spikes from multi-electrode arrays with > 500 electrodes using neural network detection and denoising, parallelized nonparametric Bayesian clustering, and matching-pursuit deconvolution, outperforming manual sorting on primate retina recordings.

bioRxiv · Mar 18, 2020 · PreprintNeuroscience

YASS: Yet Another Spike Sorter

JinHyung Lee, David Carlson, Hooshmand Shokri, Weichi Yao, Georges A. Goetz, Espen Hagen, Eleanor Batty, E. J. Chichilnisky, Gaute T. Einevoll, Liam Paninski

A dense multi-electrode array spike sorter that triages collisions, clusters clean waveforms with a coreset Dirichlet process mixture, then deconvolves, giving more stable clusters and faster template learning than KiloSort.

bioRxiv · Jun 19, 2017 · PreprintNeuroscience✦ In-depth digest