Author

Huangchen Cui

Tsinghua University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Synthetic Biology· 2

Signature Assays, Organisms & Methods

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Assay:DNA methylation· 2 Research Focus:software / tool· 2 Approach:optimal transport· 1 Approach:statistical model· 1

Frequent Co-Authors

Bryan WeiiD· 1 shared Corey BeckeriD· 1 shared Da HaniD· 1 shared Florian KatzmeieriD· 1 shared J H LeeiD· 1 shared Jiayi ZhangiD· 1 shared Julie FinkeliD· 1 shared Matthew AquilinaiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperSynthetic Biology

Bryan WeiORCID

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2 papers

Recent·Most cited

A computational framework for designing micron-scale crisscross DNA megastructures

Matthew Aquilina, Florian Katzmeier, Minke A. D. Nijenhuis, Siyuan S. Wang, Corey Becker, Yichen Zhao, Su Hyun Seok, Julie Finkel, Huangchen Cui, J H Lee, Seungwoo Lee, William M. Shih

This paper develops a computational framework to design crisscross DNA megastructures, optimizing handle assignment and expanding handle libraries to enable large-scale fabrication.

Nature Communications · Jul 17, 2026Peer-reviewedSynthetic Biology

Light-up nanostructures with allosteric DNA mimics of GFP

Tianqing Zhang, Xinmin Qian, Jiayi Zhang, Huangchen Cui, Tanxi Bai, Wen Wang, Yuxin Wang, Zhaoli Gao, Da Han, Wenwen Zeng, Bryan Wei

This paper describes the design of synthetic allosteric DNA aptamers with tunable fluorescent properties and their application in DNA computing and responsive nanostructures.

bioRxiv · Jul 10, 2025 · PreprintSynthetic Biology