ACEseq - allele specific copy number estimation from whole genome sequencing
Kortine Kleinheinz, Isabell Bludau, Daniel Hübschmann, Michael C. Heinold, Philip Reiner Kensche, Zuguang Gu, Cristina López, Michael Hummel, Wolfram Klapper, Peter Loof Møller, Inga Vater, Rabea Wagener, ICGC MMML-Seq project, Benedikt Brors, Reiner Siebert, , Matthias Schlesner
ACEseq estimates allele-specific copy numbers, tumor purity, ploidy, and homologous recombination deficiency scores from tumor whole-genome sequencing by combining GC-bias correction, replication-timing correction, and structural variant breakpoints.
bioRxiv · Oct 29, 2017 · PreprintBioinformatics