Get to know your neighbors with a SNAQ™: A framework for single cell spatial neighborhood analysis in immunohistochemical images
Aryeh Silver, Avirup Chakraborty, Avinash Pittu, Diana Feier, Miruna Anica, Illeana West, Matthew R. Sarkisian, Loic P. Deleyrolle
The paper introduces SNAQTM, an R Markdown script for analyzing spatial neighborhoods in immunohistochemical images to study tumor-immune interactions.
bioRxiv · Aug 4, 2024 · PreprintBioinformatics