Author

Ivan Sovic

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:genome assembly· 2 Assay:long-read sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Mile Sikic· 3 shared Niranjan NagarajaniD· 2 shared Andreas WilmiD· 1 shared Karolj Skala· 1 shared Kresimir Krizanovic· 1 shared Robert Vaser· 1 shared Shannon Nicole Fenlon· 1 shared Swaine Chen· 1 shared

Activity by Year

2015-2016 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 15 mutual co-author links

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3 shared papersBioinformatics

Mile Sikic

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Fast and accurate de novo genome assembly from long uncorrected reads

Robert Vaser, Ivan Sovic, Niranjan Nagarajan, Mile Sikic

This paper demonstrates that high-quality genome assemblies can be generated from long uncorrected reads using Racon, which is faster than existing methods.

bioRxiv · Aug 5, 2016Bioinformatics

Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads

Ivan Sovic, Kresimir Krizanovic, Karolj Skala, Mile Sikic

The paper evaluates hybrid and non-hybrid de novo assembly methods for nanopore reads, finding hybrid methods perform better at lower coverage and non-hybrid methods succeed at higher coverage.

bioRxiv · Nov 13, 2015Bioinformatics

Fast and sensitive mapping of error-prone nanopore sequencing reads with GraphMap

Ivan Sovic, Mile Sikic, Andreas Wilm, Shannon Nicole Fenlon, Swaine Chen, Niranjan Nagarajan

GraphMap improves nanopore sequencing read mapping with high sensitivity and precision, outperforming existing tools in variant and structural variant detection.

bioRxiv · Jun 10, 2015Genomics